Internal / Draft / Data Manager / Json

AssayDM - Result Table

Last updated on 13-Mar-2018 by Thomas P. Boesen
Thomas P. Boesen

Founder
boesen@scifeon.com

This is the internal working data-structure of the AssayDM Analyzer page components

The view model for the defult Analyzer page contains a list of result tables (this.resultTables) and a curve-fitting model (this.model).

The entity and parent parts of a result record contain the 'raw' data for the result based on the Scifeon datamodel.

The keyValues and resultValues are derived from the raw data and prepared for the user interface, e.g. for display, filtering and pivoting.

The columns array lists the member names in the keyValues and resultValues objects, with additional metadata. The column selector manipulates the content of this list.

Example of a single result-table

{
    name: 'CurveFit',
    type: 'CurveFit',
    columns: [
        { type: 'key', name: 'plate', label: 'Plate', format: 'text', show: true },
        { type: 'key', name: 'parentSampleID', label: 'Parent Sample', format: 'text' },
        { type: 'result', name: 'ec50', label: 'EC50', format: 'number' },
        { type: 'result', name: 'log-ec50', label: 'LogEC50', format: 'number', show: true },
        { type: 'result', name: 'top', label: 'Top', format: 'number', show: true },
        { type: 'result', name: 'bottom', label: 'Bottom', format: 'number', show: true }
    ],
    results: [
        {
            name: 'Plate1-3',
            parent: { ... },    // Parent entity, e.g. data-series for curve-fit
            keyValues: {
                plate: 'Plate-1',
                parentSampleID: 'S00097',
                sampleName: 'CS047'
            },
            resultValues: {
                logEC50: -8.3,
                ec50: 5.01187E-9,
                top: 98.3,
                bottom: 21.7,
                slope: 1.04,
                hasActivity: 'YES',
                window: 76.6
            },
            curve: [
                { valueX: 1.0E-9, valueY: 47.5 },
                { valueX: 1.02E-9, valueY: 47.6 },
                ...
            ]
            entity: {           // E.g. ResultCurveFit or ResultDataSeries entity
                eClass: 'ResultCurveFit',
                type: 'DoseResponse',
                status: 'Initial',
                subjectID: 'S00097',
                subjectClass: 'Sample',
                dataSeriesID: '#idDS4',
                model: '4PL',
                modelVersion: '1'
                fitResult: {
                    parameters: {
                        logEC50: -8.3,
                        ec50: 5.01187E-9,
                        top: 98.3,
                        bottom: 21.7,
                        slope: 1.04
                    }
                }
            }
        }
    ]
}
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Return values from R Service

{
    name: 'P00001|S00097',
    parameters: {
        bottom: 10.5570244,
        inflection: 5.37202395,
        slope: -1.6210855,
        top: 98.0802301
    }
}
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